Publications

  • E. Fimmel, H. Saleh, L. Strüngmann: Forbidden codon combinations in error-detecting circular codes. Theory Biosci.144, 67–80 (2025). https://doi.org/10.1007/s12064-024-00431-6
  • R. Prinz, P.Bucher, Á. Kun, O. Paredes, A. Aragno, C. Shelby, M. Gumbel, E. Fimmel, L. Strüngmann: Codes across (life)sciences, BioSystems, Volume 254, (2025), 105515, ISSN 0303-2647, https://doi.org/10.1016/j.biosystems.2025.105515.
  • B. Dragovich, E. Fimmel, A. Khrennikov, N. Ž. Mišić: Modeling the origin, evolution, and functioning of the genetic code, BioSystems, Volume 247 (2025), 105373,
    ISSN 0303-2647,https://doi.org/10.1016/j.biosystems.2024.105373.
  • <font>L. Fuchs, B. Goldsmith, L. Salce und L. Strüngmann: Cellular covers of divisible uniserial modules over valuation domains,Forum Math. 36 (6) (2024), 1613-1629.</font>
  • N. Štambuk, E. Fimmel, P. Konjevoda, K. Brčić-Kostić, A. Gračanin, H. Saleh:
    Novel amino acid distance matrices based on conductance measure, BioSystems, Volume 246 (2024), 105355, ISSN 0303-2647,https://doi.org/10.1016/j.biosystems.2024.105355.

  • B. Goldsmith, K. Gong, L. Strüngmann: Cyclic subgroup transitivity for Abelian groups. Rend. Sem. Mat. Univ. Padova 153 (2025), pp. 35–59 DOI 10.4171/RSMUP/143

  • C.O. Kamga, S. Atamewoue, C. Lele, L. Strüngmann: Some properties of (strong) semi-divisible residuated lattices and modal operators. Journal of Applied Non-Classical Logics, 1–22. https://doi.org/10.1080/11663081.2025.2518837

  • F. Siegel, A. Torelli, M. Mattis, J. Debatin, P. Erben, M. Gumbel: Proliferation and regeneration of the healthy human urothelium: A multi-scale simulation approach with 16 hypotheses of cell differentiation. PLOS One. 20.10.1371/journal.pone.0325132. 

  • S.K. Mueller et al. …I. Wolf: An Automatic Self-supervised Phase-Based Approach to Aligned Long-Axis Strain Measurements in Four Chamber Cardiovascular Magnetic Resonance Imaging. In: Chabiniok, R., Zou, Q., Hussain, T., Nguyen, H.H., Zaha, V.G., Gusseva, M. (eds) Functional Imaging and Modeling of the Heart. FIMH 2025. Lecture Notes in Computer Science, vol 15673 (2025). Springer, Cham. https://doi.org/10.1007/978-3-031-94562-5_11<font> </font>

  • <font>A. Tallee Kakeu, N. Koguep, B. Blaise, C. Lele und L. Strüngmann: Relative annihilators in bounded commutative residuated lattices, Indian J. Pure Appl. Math. 54 (2) (2023), 359-374.</font>

  • <font>A. Tallee Kakeu, N. Koguep, B. Blaise, C. Lele und L. Strüngmann: L-Fuzzy annihilators in residuated lattices, Math. Slovaca 73 (6) (2023), 1359-1372.</font>

  • <font>E. Fimmel, C.J. Michel, F. Pirot, J-S. Sereni, M. Starman, L. Strüngmann: Diletter and triletter comma-free codes over finite alphabets, Australas. J. Comb. 86 (2) (2023), 233-270.</font>

  • E. Fimmel, M. Gumbel, M. Starman, L. Strüngmann: Computational Analysis of Genetic Code Variations Optimized for the Robustness against Point Mutations with Wobble-Like Effects. Life (2021), 11, 1338. https://doi.org/10.3390/life11121338
  • Fimmel, E., Gumbel M., Starman, M., Strüngmann, L.: Robustness against point mutations ofgenetic code extensions under consideration ofwobble-like effects, BioSystems 208 (2021), 104485, https://doi.org/10.1016/j.biosystems.2021.104485
  • Gumbel, M., Wiedemann, P: Motif lengths of circular codes in coding sequences. J. theor. biology (2021). Vol. 523. https://doi.org/10.1016/j.jtbi.2021.110708.
  • Fimmel E., Rodin A.: Editorial: The Foundations of Mathematics and Theoretical Biology, BioSystems 204 (2021), 104416, https://doi.org/10.1016/j.biosystems.2021.104416
  • Fimmel E.: Comments on Vladimir Voevodsky's biologically motivates works, BioSystems 204 (2021), 104387,https://doi.org/10.1016/j.biosystems.2021.104387
  • Shelah, S., Strüngmann, L.: Infinite combinatorics in mathematical biology, BioSystems 204  (2021), 104392, https://doi.org/10.1016/j.biosystems.2021.104392
  • <font>E. Blagoveshchenskaya und L. Strüngmann: Near–isomorphism for bounded completely decomposable groups, Israel J. of Mathematics 241 (1) (2021), 277-299.</font>
  • Fayazi, F., Fimmel, E., Strüngmann, L.:Equivalence classes of circular codes induced by permutation groups, Theory in Biosciences 140(1), 107-121 (2021),10.1007/s12064-020-00337-z
  • Tsafack, S.A.,  Ndjeya, S.,  Strüngmann, L., Lele, C.: Fuzzy Linear Codes, Fuzzy Information and Engineering, DOI: 10.1080/16168658.2019.1706959 (2020), 17 pages.
  • Blagoveshchenskaya, E.,  Strüngmann, L.: Algorithms in direct decompositions of torsion-free abelian groups, Itogi Nauki i Tekhniki. Ser. Sovrem. Mat. Pril. Temat. Obz.,176, (2020), 19–25.
  • Fimmel E., Michel Ch. J., Pirot F., Sereni J-S., Starman, M., Strüngmann L.: The relation between k-circularity and circularity of codes, Bull Math Biol82, 105 (2020). https://doi.org/10.1007/s11538-020-00770-7.
  • Fimmel E, Starman, M, Strüngmann L: Circular tessera codes in the evolution of the genetic code, Bull Math Biol82, 48 (2020). https://doi.org/10.1007/s11538-020-00724-z.
  • Blagoveshchenskaya B, Popova N, Kogan N, Strüngmann L: Parallelism as a universal principle of structuring information flows, Proc. CSIS'19, St. Petersburg, 2019, doi: 10.1145/3373722.
  • Fimmel E, Petoukhov S.V: Development of Models of Quantum Biology Based on the Tensor Product of Matrices,Advances in Intelligent Systems and Computing, Vol. 1126 AISC, 2020, pp 126-135.
  • Fimmel E, Strüngmann L: Linear codes and the mitochondrial genetic code. Biosystems. 2019 Oct;184:103990. doi: 10.1016/j.biosystems.2019.103990.
  • Fimmel E., Michel Ch. J., Pirot F., Sereni J-S., Strüngmann L.: Mixed circular codes,  Mathematical Biosciences,Volume 317, November 2019, 108231, doi.org/10.1016/j.mbs.2019.108231
  • Schwedhelm I, Zdzieblo D, Appelt-Menzel A, Berger C, Schmitz T, Schuldt B, Franke A, Müller FJ, Pless O, Schwarz T, Wiedemann P, Walles H, HansmannJ: Automated real-time monitoring of human pluripotent stem cell aggregation in stirred tank reactors. Scientific Reports 9, 2019, Article 12297
  • E. Fimmel, M. Gumbel, A. Karpuzoglu, S. Petoukhov: On comparing composition principles of long DNA sequences with those of random ones. BioSystems (2019). https://doi.org/10.1016/j.biosystems.2019.04.003
  • P. Błażej, E. Fimmel, M. Gumbel: The Quality of Genetic Code Models in Terms of Their Robustness Against Point Mutations. Bull Math Biol (2019). doi.org/10.1007/s11538-019-00603-2
  • E. Fimmel E., S. Petoukhov: Genetic Code Modelling from the Perspective of Quantum Informatics, In: Hu Z., Petoukhov S., He M. (eds) Advances in Artificial Systems for Medicine and Education II. AIMEE2018 2018. Advances in Intelligent Systems and Computing, vol 902. Springer
  • O. Paredes, I. May-Canche, E. Fimmel: A code biology analysis of the regulatory regions in cell lines. Revista Mexicana de Ingenieria Biomedica, [S.l.], v. 40, n. 1, p. 1-11, dic. 2018. ISSN 2395-9126
  • F. Isensee, P. F. Jaeger, P. M. Full, I. Wolf, S. Engelhardt, and K. H. Maier-Hein: “Automatic Cardiac Disease Assessment on cine-MRI via Time-Series Segmentation and Domain Specific Features,” in Statistical Atlases and Computational Models of the Heart. ACDC and MMWHS Challenges, 2018, pp. 120–129.
  • O. Bernard, A. Lalande, C. Zotti, F. Cervenansky, X. Yang, P. Heng, I. Cetin, K. Lekadir, O. Camara, M. A. G. Ballester, G. Sanroma, S. Napel, S. Petersen, G. Tziritas, E. Grinias, M. Khened, V. A. Kollerathu, G. Krishnamurthi, M. Rohé, X. Pennec, M. Sermesant, F. Isensee, P. Jäger, K. H. Maier-Hein, P. M. Full, I. Wolf, S. Engelhardt, C. F. Baumgartner, L. M. Koch, J. M. Wolterink, I. Išgum, Y. Jang, Y. Hong, J. Patravali, S. Jain, O. Humbert, P. Jodoin: “Deep Learning Techniques for Automatic MRI Cardiac Multi-Structures Segmentation and Diagnosis: Is the Problem Solved?,” IEEE Transactions on Medical Imaging, vol. 37, no. 11, pp. 2514–2525, Nov. 2018.
  • S. Engelhardt, S. Sauerzapf, S. Al-Maisary, M. Karck, B. Preim, I. Wolf, R. De Simone: “Elastic Mitral Valve Silicone Replica Made from 3D-Printable Molds Offer Advanced Surgical Training,” in Bildverarbeitung für die Medizin 2018, 2018, pp. 74–79.
  • K. Kraljic, L. Strungmann, E. Fimmel, M. Gumbel: "Genetic Code Analysis Toolkit: A novel tool to explore the coding properties of the genetic code and DNA sequences", SoftwareX, Volume 7, January-June 2018, Pages 12-14, https://doi.org/10.1016/j.softx.2017.10.008
  • A. ul M. Khan, A. Torelli, I. Wolf, N. Gretz: “AutoCellSeg: robust automatic colony forming unit (CFU)/cell analysis using adaptive image segmentation and easy-to-use post-editing techniques,” Scientific Reports, vol. 8, no. 1, p. 7302, May 2018.
  • S. Engelhardt, R. De Simone, P. M. Full, M. Karck, I. Wolf: “Improving Surgical Training Phantoms by Hyperrealism: Deep Unpaired Image-to-Image Translation from Real Surgeries,” in Medical Image Computing and Computer Assisted Intervention – MICCAI 2018, 2018, pp. 747–755.
  • E. Fimmel, Ch.J. Michel, M. Starman and L. Strüngmann: “Self-complementary circular codes in coding theory ”, Theory in Biosciences: https://www.ncbi.nlm.nih.gov/pubmed/29532441.
  • E. Fimmel and L. Strüngmann: “Mathematical Fundamentals for the noise immunity of the Genetic Code”, Biosystems. 2018 Feb;164:186-198.
  • E. Fimmel, Ch. Michel and L. Strüngmann: “Diletter circular codes over finite alphabets”, Mathematical Biosciences 2017 Oct 10;294: pp.120-129. https://doi.org/10.1016/j.mbs.2017.10.001.
  • E. Fimmel, M. Gumbel and L. Strüngmann: “Exploring structure and evolution of the genetic code with the software tool GCAT”, Advances in Intelligent Systems and Computing Vol 658, Springer Verlag, 14-22 (2018).
  • Belini VL, Caurin GAP, Wiedemann P, Suhr H: Yeast fermentation of sugarcane for ethanol production: Can it be monitored by using in situ microscopy? Braz J Chem Eng 34(04), 2017, 949 – 959
  • E. Fimmel, Ch. J. Michel and L. Strüngmann: "Strong Comma-Free Codes in Genetic Information", Bulletin of Mathematical Biology, 79(8), 2017,1796-1819, DOI 10.1007/s11538-017-0307-0.
  • Fimmel E., Gumbel M., Strüngmann L.: Exploring Structure and Evolution of the Genetic Code with the Software Tool GCAT, AIMEE 2017: Advances in Artificial Systems for Medicine and Education, 658, DOI 10.1007/978-3-319-67349-3-2, pp 14-22
  • PA. Dias, T. Dunkel, DA. Sierra Fajado, EL. de León Gallegos, M. Denecke, P. Wiedemann, FK. Schneider and H. Suhr: "Image processing for identification and quantification of filamentous bacteria in in situ acquired images", BioMedical Engineering OnLine 15:64, DOI: 10.1186/s12938-016-0197-7 (2016).
  • F. DA. Sierra, KA. Melzak, K. Janetzko, H. Klüter, H. Suhr, K. Bieback and P. Wiedemann: "Flow morphometry to assess the red blood cell storage lesion", Cytometry A 91(9), 874-882 (2017).
  • A. Torelli, P. Erben, J. Debatin and M. Gumbel: „Proliferation and regeneration of the healthy human urothelium: a multi-scale simulation approach with 16 hypotheses of cell differentiation", submitted to Scientific Reports. 

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